5EGC
Structure of the Adeno-Associated Virus Serotype 1 sialic acid complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE A1 |
Synchrotron site | CHESS |
Beamline | A1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-04-19 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.9791 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 455.627, 261.749, 450.980 |
Unit cell angles | 90.00, 111.06, 90.00 |
Refinement procedure
Resolution | 49.923 - 3.011 |
R-factor | 0.2688 |
Rwork | 0.269 |
R-free | 0.27640 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.065 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.050 |
High resolution limit [Å] | 3.000 | 8.130 | 3.000 |
Rmerge | 0.163 | 0.071 | 0.468 |
Rmeas | 0.205 | 0.090 | 0.624 |
Rpim | 0.123 | 0.054 | 0.409 |
Total number of observations | 1170740 | ||
Number of reflections | 593352 | ||
<I/σ(I)> | 5.1 | ||
Completeness [%] | 61.6 | 63.3 | 44.6 |
Redundancy | 2 | 2.3 | 1.5 |
CC(1/2) | 0.991 | 0.862 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.3 | 298 | 0.1 M HEPES-NaOH pH 7.3, 0.05 M MgCl2, 0.03% NaN3, 1.0 M NaCl, 7% PEG 6K and 25% glycerol |