5EDK
Crystal structure of prothrombin deletion mutant residues 146-167 ( Form II ).
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-06-27 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 84.192, 84.192, 346.427 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 86.610 - 3.214 |
R-factor | 0.29274 |
Rwork | 0.291 |
R-free | 0.32266 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdb code 4O03 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.211 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 86.610 | 3.260 |
High resolution limit [Å] | 3.200 | 3.200 |
Rmerge | 0.155 | 0.441 |
Number of reflections | 20053 | |
<I/σ(I)> | 7 | 2 |
Completeness [%] | 94.5 | 94 |
Redundancy | 4.4 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.1 | 293 | 0.2 M di-Na hydrogen phosphate and 20% PEG 3350 |