5EB0
crystal form II of YfiB belonging to P41
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-09-26 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9791 |
Spacegroup name | P 41 |
Unit cell lengths | 46.953, 46.953, 154.242 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.953 - 2.800 |
R-factor | 0.195 |
Rwork | 0.192 |
R-free | 0.26490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3khn |
RMSD bond length | 0.009 |
RMSD bond angle | 1.132 |
Data reduction software | d*TREK |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.850 |
High resolution limit [Å] | 2.800 | 7.590 | 2.800 |
Rmerge | 0.146 | 0.101 | 0.497 |
Total number of observations | 89623 | ||
Number of reflections | 8105 | ||
<I/σ(I)> | 8.5 | ||
Completeness [%] | 97.8 | 83.6 | 100 |
Redundancy | 11.1 | 9.9 | 11.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 0.2 M lithium sulfate monohydrate, 0.1 M Tris-HCl, 30%(w/v) polyethylene glycol 4000 |