5E4L
Structure of ligand binding region of uPARAP at pH 5.3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-03-28 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 74.270, 102.700, 87.760 |
Unit cell angles | 90.00, 94.54, 90.00 |
Refinement procedure
Resolution | 54.430 - 2.440 |
R-factor | 0.2194 |
Rwork | 0.217 |
R-free | 0.25880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1qo6 1tdq |
RMSD bond length | 0.008 |
RMSD bond angle | 1.020 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.430 | 2.530 |
High resolution limit [Å] | 2.440 | 2.440 |
Rmerge | 0.085 | 0.710 |
Number of reflections | 48904 | |
<I/σ(I)> | 16.2 | 2.9 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 7.6 | 7.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.3 | 293 | 8-12% (w/v) PEG 3350, 200 mM NaCl, 35 mM CaCl2, 50 mM sodium acetate |