5E2A
Crystal structure of NTMT1 in complex with N-terminally methylated SPKRIA peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-08-08 |
Detector | RIGAKU SATURN A200 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 107.160, 107.160, 205.589 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.600 - 1.750 |
R-factor | 0.1581 |
Rwork | 0.157 |
R-free | 0.18400 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | pdbid 2ex4 |
RMSD bond length | 0.016 |
RMSD bond angle | 1.761 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.12) |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.620 | 29.620 | 1.780 |
High resolution limit [Å] | 1.750 | 9.090 | 1.750 |
Rmerge | 0.125 | 0.024 | 1.139 |
Rmeas | 0.129 | 0.024 | 1.169 |
Rpim | 0.028 | 0.006 | 0.261 |
Total number of observations | 1473712 | 9987 | 75685 |
Number of reflections | 70896 | ||
<I/σ(I)> | 27.6 | 108.9 | 3.5 |
Completeness [%] | 100.0 | 97.2 | 99.9 |
Redundancy | 20.8 | 16.3 | 19.8 |
CC(1/2) | 0.999 | 1.000 | 0.841 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 26% PEG3350, 16% tacsimate |