Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5DYF

The crystal structure of Aminopeptidase N in complex with N-benzyl-1,2-diaminoethylphosphonic acid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2015-06-15
DetectorADSC QUANTUM 315r
Wavelength(s)0.9794
Spacegroup nameH 3
Unit cell lengths224.644, 224.644, 57.938
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution28.650 - 1.854
R-factor0.1474
Rwork0.146
R-free0.17440
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2gtq
RMSD bond length0.005
RMSD bond angle0.915
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareMOLREP
Refinement softwarePHENIX (dev_1888)
Data quality characteristics
 Overall
Low resolution limit [Å]28.650
High resolution limit [Å]1.854
Rmerge0.070
Number of reflections119960
<I/σ(I)>18.7
Completeness [%]99.9
Redundancy3.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP72912.0 M Ammonium Sulfate

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon