Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5DXX

Crystal structure of Dbr2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U
Synchrotron siteSSRF
BeamlineBL17U
Temperature [K]100
Detector technologyCCD
Collection date2014-12-20
DetectorADSC QUANTUM 315r
Wavelength(s)0.979
Spacegroup nameP 21 21 21
Unit cell lengths52.580, 80.970, 86.160
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.032 - 1.450
R-factor0.1308
Rwork0.130
R-free0.16340
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1oya
RMSD bond length0.006
RMSD bond angle0.995
Data reduction softwareXSCALE
Data scaling softwareXSCALE
Phasing softwarePHASER (2.5.1)
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]38.0401.490
High resolution limit [Å]1.4506.4801.450
Rmerge0.0460.0340.229
Rmeas0.0500.0380.255
Total number of observations458761
Number of reflections657917104815
<I/σ(I)>26.5443.366.99
Completeness [%]99.782.499.5
Redundancy6.97
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.52780.1M Bis-Tris, 25% PEG3350

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon