5DXW
Crystal structure of mouse PD-L1 nanobody
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-03-11 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.075 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 85.191, 29.679, 35.268 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 18.230 - 1.441 |
R-factor | 0.1695 |
Rwork | 0.169 |
R-free | 0.19340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ol0 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.067 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.8_1069) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 18.230 |
High resolution limit [Å] | 1.441 |
Number of reflections | 30989 |
<I/σ(I)> | 23.4 |
Completeness [%] | 99.3 |
Redundancy | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | PEG 400, ammonium sulfate, hepes |