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5DWM

Crystal structure of Phosphinothricin N-acetyltransferase from Brucella ovis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2015-03-18
DetectorRAYONIX MX-300
Wavelength(s)0.97856
Spacegroup nameP 1
Unit cell lengths51.110, 61.770, 77.030
Unit cell angles101.73, 92.29, 115.33
Refinement procedure
Resolution26.173 - 1.450
R-factor0.1424
Rwork0.141
R-free0.17280
Structure solution methodSAD
Starting model (for MR)iodide phased
RMSD bond length0.005
RMSD bond angle0.762
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.490
High resolution limit [Å]1.4506.4801.450
Rmerge0.0470.0200.475
Rmeas0.0550.0240.549
Total number of observations550962
Number of reflections140786155510201
<I/σ(I)>20.9656.393.23
Completeness [%]96.294.894.3
Redundancy3.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5290native data: Molecular dimensions Morpheus screen, F3: 10% w/v PEG 4000, 20% v/v glycerol, 20mM of each D-glucose, D-mannose, D-galactose, L-fucose, D-xylose, D-N-acetyld-glucosamine, 100mM MES/imidazole pH 6.5, BrovA.17352.a.B1.PS02313 at 4mg/ml, supplemented with 5mM Mg/AMPPNP, cryo: direct , tray 261581 f3, puck dka9-1, iodide data: crystals from the same well were soaked for 20sec in reservoir with 10% EG and 500mM NaI and then vitrified, tray 261581 f3, puck hml1 6-3, anomalous differences for the iodide data set are provided with the structure
1VAPOR DIFFUSION, SITTING DROP6.5290native data: Molecular dimensions Morpheus screen, F3: 10% w/v PEG 4000, 20% v/v glycerol, 20mM of each D-glucose, D-mannose, D-galactose, L-fucose, D-xylose, D-N-acetyld-glucosamine, 100mM MES/imidazole pH 6.5, BrovA.17352.a.B1.PS02313 at 4mg/ml, supplemented with 5mM Mg/AMPPNP, cryo: direct , tray 261581 f3, puck dka9-1, iodide data: crystals from the same well were soaked for 20sec in reservoir with 10% EG and 500mM NaI and then vitrified, tray 261581 f3, puck hml1 6-3, anomalous differences for the iodide data set are provided with the structure

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PDB entries from 2024-09-11

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