5DRK
2.3 Angstrom Structure of CPII, a nitrogen regulatory PII-like protein from Thiomonas intermedia K12, bound to ADP, AMP and bicarbonate.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-10-13 |
Detector | RIGAKU RAXIS HTC |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.510, 75.610, 79.860 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.910 - 2.380 |
R-factor | 0.2439 |
Rwork | 0.244 |
R-free | 0.24530 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.018 |
RMSD bond angle | 1.723 |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.910 | 2.440 | |
High resolution limit [Å] | 2.380 | 10.630 | 2.380 |
Rmerge | 0.113 | 0.028 | 0.946 |
Rmeas | 0.118 | 0.029 | 0.990 |
Total number of observations | 160664 | ||
Number of reflections | 13864 | 187 | 910 |
<I/σ(I)> | 20.51 | 69.46 | 3.06 |
Completeness [%] | 99.7 | 98.9 | 96.1 |
Redundancy | 12.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7.2 | 298 | 0.2 M Sodium dihydrogen Phosphate monohydrate, 20% w/v PEG 3350 |