5DD4
Apo structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-11-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97934 |
Spacegroup name | I 21 3 |
Unit cell lengths | 123.735, 123.735, 123.735 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.160 - 2.560 |
R-factor | 0.1847 |
Rwork | 0.183 |
R-free | 0.22190 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.311 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.580 |
High resolution limit [Å] | 2.560 | 8.740 | 2.560 |
Rmerge | 0.114 | 0.074 | 0.992 |
Total number of observations | 111364 | ||
Number of reflections | 10292 | ||
<I/σ(I)> | 10.8 | ||
Completeness [%] | 99.9 | 97.5 | 100 |
Redundancy | 10.8 | 9.5 | 11 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 297 | 2.1M Malic Acid |