5DB5
Crystal structure of PLP-bound E. coli SufS (cysteine persulfide intermediate) in space group P21
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-06-12 |
Detector | RIGAKU RAXIS HTC |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 59.680, 114.150, 63.110 |
Unit cell angles | 90.00, 116.21, 90.00 |
Refinement procedure
Resolution | 40.200 - 2.750 |
R-factor | 0.1677 |
Rwork | 0.165 |
R-free | 0.21680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1kmj |
RMSD bond length | 0.005 |
RMSD bond angle | 0.910 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.730 | 2.820 | |
High resolution limit [Å] | 2.750 | 12.290 | 2.750 |
Rmerge | 0.114 | 0.047 | 0.467 |
Rmeas | 0.122 | 0.051 | 0.504 |
Total number of observations | 148918 | ||
Number of reflections | 19720 | 230 | 1352 |
<I/σ(I)> | 15.62 | 37.54 | 4.38 |
Completeness [%] | 99.1 | 96.2 | 93.3 |
Redundancy | 7.55 | 6.86 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 1:1 or 1:2 protein to reservoir solution (4% PEG3350, 200 mM ammonium citrate), crystals grown over 3 days, cryoprotectant: reservoir solution + 10% PEG400 |