5DAS
Structure of Mycobacterium tuberculosis NadD in complex with NADP, P21212, form 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-04 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 0.97903 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 117.820, 156.130, 48.950 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 65.080 - 2.200 |
R-factor | 0.1958 |
Rwork | 0.194 |
R-free | 0.23860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4s1o |
RMSD bond length | 0.010 |
RMSD bond angle | 1.367 |
Data reduction software | XDS (November 3, 2014) |
Data scaling software | XSCALE (November 3, 2014 BUILT=20141118) |
Phasing software | PHASER (2.5.6) |
Refinement software | REFMAC (5.8.0124) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 65.080 | 2.260 | |
High resolution limit [Å] | 2.200 | 9.840 | 2.200 |
Rmerge | 0.209 | 0.067 | 0.981 |
Rmeas | 0.227 | 0.074 | 1.073 |
Total number of observations | 304725 | ||
Number of reflections | 46782 | 593 | 3374 |
<I/σ(I)> | 7.97 | 19.27 | 2.14 |
Completeness [%] | 99.9 | 97.7 | 99.4 |
Redundancy | 6.5 | 6.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 298 | 0.1M sodium citrate pH 5.6, 20% isopropanol, 20% PEG4000 |