5DAA
E177K MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE-5'-PHOSPHATE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 278 |
Detector technology | IMAGE PLATE |
Collection date | 1998-01-12 |
Detector | RIGAKU RAXIS II |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 77.850, 91.870, 89.380 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.900 |
Rwork | 0.195 |
R-free | 0.24500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1daa |
RMSD bond length | 0.007 |
RMSD bond angle | 23.900 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (0.5) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 3.200 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.144 | 0.337 |
Total number of observations | 39415 * | |
Number of reflections | 13649 * | |
<I/σ(I)> | 9.9 | 4.9 |
Completeness [%] | 93.1 | 94.1 |
Redundancy | 2.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.3 * | PDA INACTIVATED PROTEIN WAS CONCENTRATED TO 30 MG/ML IN 0.1 M POTASSIUM PHOSPHATE BUFFER PH 7.6 CONTAINING 50 UM PLP AND 0.001 BETA-MERCAPTOETHANOL. CRYSTALS WERE THEN GROWN BY THE HANGING DROP METHOD IN 27% PEG 4000, 0.4 M SODIUM ACETATE, AND 0.1 M TRIS-CHLORIDE PH 8.5., vapor diffusion - hanging drop |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | K3PO4 | ||
2 | 1 | 1 | BETA-MERCAPTOETHANOL | ||
3 | 1 | 1 | PEG 4000 | ||
4 | 1 | 1 | TRIS-CHLORIDE | ||
5 | 1 | 1 | sodium acetate |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | enzyme | 30 (mg/ml) | |
2 | 1 | drop | potassium phosphate | 50 (mM) | |
3 | 1 | drop | 0.13 (M) | ||
4 | 1 | drop | EDTA | 0.2 (mM) | |
5 | 1 | drop | PLP | 0.05 (M) | |
6 | 1 | reservoir | PEG3350 | 26 (%) | |
7 | 1 | reservoir | sodium acetate | 0.3 (M) | |
8 | 1 | reservoir | Tris-HCl | 0.1 (M) |