5D9B
Luciferin-regenerating enzyme solved by SIRAS using XFEL (refined against native data)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | FREE ELECTRON LASER |
Source details | SACLA BEAMLINE BL3 |
Synchrotron site | SACLA |
Beamline | BL3 |
Temperature [K] | 293 |
Detector technology | CCD |
Collection date | 2014-02-13 |
Detector | MPCCD |
Wavelength(s) | 0.981 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.210, 77.590, 84.760 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 9.998 - 1.500 |
R-factor | 0.1864 |
Rwork | 0.184 |
R-free | 0.23180 |
Structure solution method | SIRAS |
RMSD bond length | 0.011 |
RMSD bond angle | 1.346 |
Data reduction software | CrystFEL |
Phasing software | SHELXDE |
Refinement software | PHENIX (1.9_1690) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 10.000 |
High resolution limit [Å] | 1.500 |
Number of reflections | 51698 |
<I/σ(I)> | 2.56 |
Completeness [%] | 100.0 |
Redundancy | 222.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 7.5 | 293 | mixing purified LRE solution (27 mg/mL LRE, 10 mM HEPES pH 7.5, 0.1 M NaCl, 10% glycerol) and precipitant solution (35% PEG3350, 10% MPD, 0.1 M HEPES pH 7.5, 0.2 M MgCl2) at ratios between 1:2 and 1:1.6 |