Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5D85

Staphyloferrin B precursor biosynthetic enzyme SbnA bound to aminoacrylate intermediate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL7-1
Synchrotron siteSSRL
BeamlineBL7-1
Temperature [K]100
Detector technologyCCD
Collection date2013-07-28
DetectorADSC QUANTUM 315r
Wavelength(s)1.1587
Spacegroup nameP 21 21 2
Unit cell lengths56.741, 117.408, 47.818
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.075 - 1.920
R-factor0.1741
Rwork0.171
R-free0.21400
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.013
RMSD bond angle1.286
Data reduction softwareXDS
Data scaling softwareAimless (0.3.11)
Phasing softwarePHENIX ((phenix.refine: 1.8.4_1496))
Refinement softwarePHENIX ((phenix.refine: 1.8.4_1496))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]39.14039.1401.960
High resolution limit [Å]1.9209.0001.920
Rmerge0.0820.0210.536
Rpim0.0370.0100.245
Total number of observations14879414928391
Number of reflections25115
<I/σ(I)>13.135.12.6
Completeness [%]99.59993.2
Redundancy5.94.95.5
CC(1/2)0.9990.9990.936
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52930.9-1.1 M Sodium citrate, pH 6.5

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon