Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5D3H

First bromodomain of BRD4 bound to inhibitor XD29

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2013-06-24
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths39.350, 49.090, 57.960
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution27.100 - 1.700
R-factor0.16531
Rwork0.162
R-free0.19644
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)in-house model of apo-BRD4(1)
RMSD bond length0.008
RMSD bond angle1.314
Data reduction softwareiMOSFLM (7.0.9)
Data scaling softwareAimless (0.2.17)
Phasing softwarePHASER (2.5.6)
Refinement softwareREFMAC (5.8.0069)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]27.1001.730
High resolution limit [Å]1.7001.700
Rmerge0.0460.266
Number of reflections11275
<I/σ(I)>10.92.4
Completeness [%]88.474.5
Redundancy2.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293PEG3350, Bis-tris

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon