5D13
Third PDZ domain (PDZ3) of PSD-95 complexed with CFMOC-KKETEV peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.1 |
Spacegroup name | H 3 |
Unit cell lengths | 84.940, 84.940, 210.192 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.499 - 2.151 |
R-factor | 0.2125 |
Rwork | 0.210 |
R-free | 0.25650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1tp3 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.190 |
Data reduction software | MOSFLM (7.1.0) |
Data scaling software | Aimless (0.2.17) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.8.4) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.500 | 2.220 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.090 | 0.715 |
Rpim | 0.036 | 0.339 |
Total number of observations | 206411 | 13352 |
Number of reflections | 30723 | |
<I/σ(I)> | 10.5 | 1.5 |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 6.7 | 5 |
CC(1/2) | 0.991 | 0.881 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 295 | 20 mM HEPES 100 mM NaCl 1.8 M tri-sodium citrate |