5CVB
Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a1a1 of type I collagen
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-07-23 |
Detector | NOIR-1 |
Wavelength(s) | 0.97866, 0.97887, 0.96338 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.770, 64.460, 65.390 |
Unit cell angles | 90.00, 112.72, 90.00 |
Refinement procedure
Resolution | 47.753 - 2.249 |
R-factor | 0.232 |
Rwork | 0.227 |
R-free | 0.27760 |
Structure solution method | MAD |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9-1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.760 | 47.760 | 2.290 |
High resolution limit [Å] | 2.249 | 6.100 | 2.250 |
Rmerge | 0.115 | 0.085 | 0.363 |
Rmeas | 0.124 | 0.091 | 0.417 |
Rpim | 0.046 | 0.033 | 0.198 |
Total number of observations | 116869 | ||
Number of reflections | 17539 | ||
<I/σ(I)> | 10.1 | ||
Completeness [%] | 92.6 | 100 | 54.7 |
Redundancy | 6.7 | 7.4 | 3.6 |
CC(1/2) | 0.998 | 0.786 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.4 | 295 | 0.1M BisTris, 14% PEG MME 5,000 |