5CQB
Crystal structure of E. coli undecaprenyl pyrophosphate synthase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-28 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.978 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.981, 68.229, 111.412 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.279 - 2.200 |
R-factor | 0.1943 |
Rwork | 0.192 |
R-free | 0.24440 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.031 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.280 | 46.280 | 2.270 |
High resolution limit [Å] | 2.200 | 9.070 | 2.200 |
Rmerge | 0.129 | 0.024 | 1.142 |
Rpim | 0.060 | 0.013 | 0.527 |
Total number of observations | 134678 | 1828 | 11494 |
Number of reflections | 25073 | ||
<I/σ(I)> | 13 | 53.2 | 1.8 |
Completeness [%] | 99.9 | 98.6 | 100 |
Redundancy | 5.4 | 4.4 | 5.4 |
CC(1/2) | 0.997 | 0.999 | 0.584 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 0.1 M lithium sulfate, 0.1 M ADA 6.5, 12 % w/v PEG 4K, 20 % glycerol |