5CPZ
Crystal structure of murine polyomavirus RA strain VP1 in complex with the GT1a glycan
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X06DA |
| Synchrotron site | SLS |
| Beamline | X06DA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2012-03-15 |
| Detector | DECTRIS PILATUS 2M-F |
| Wavelength(s) | 0.99987 |
| Spacegroup name | P 31 2 1 |
| Unit cell lengths | 219.550, 219.550, 99.600 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 48.220 - 1.710 |
| R-factor | 0.1554 |
| Rwork | 0.155 |
| R-free | 0.17240 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1vpn |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.107 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHENIX |
| Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 1.750 |
| High resolution limit [Å] | 1.710 | 1.710 |
| Number of reflections | 294839 | |
| <I/σ(I)> | 15.71 | 2.17 |
| Completeness [%] | 99.7 | 99.9 |
| Redundancy | 4.3 | 3.9 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 1.7 M ammonium sulfate 4.9% (v/v) isopropanol |
