5CPQ
Disproportionating enzyme 1 from Arabidopsis - apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-08-11 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9763 |
Spacegroup name | P 1 |
Unit cell lengths | 70.650, 74.220, 79.700 |
Unit cell angles | 64.97, 69.48, 66.02 |
Refinement procedure
Resolution | 57.780 - 2.130 |
R-factor | 0.1884 |
Rwork | 0.187 |
R-free | 0.21820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1x1n |
RMSD bond length | 0.012 |
RMSD bond angle | 1.401 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 70.515 | 57.395 | 2.240 |
High resolution limit [Å] | 2.126 | 6.720 | 2.130 |
Rmerge | 0.039 | 0.541 | |
Rmeas | 0.106 | ||
Rpim | 0.063 | 0.029 | 0.404 |
Total number of observations | 181754 | 6160 | 23984 |
Number of reflections | 68185 | ||
<I/σ(I)> | 6.7 | 15 | 1.7 |
Completeness [%] | 92.6 | 96.6 | 84.4 |
Redundancy | 2.7 | 2.7 | 2.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 1 microliter of 9% PEG2000 MME in 0.1 M HEPES-NaOH, pH 8.0 was added to 1 microliter of protein at a concentration of 10 mg/ml in 20 mM HEPES-NaOH, pH 7.5, 150 mM NaCl |