5CPH
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-11-23 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9763 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 142.852, 55.681, 51.569 |
Unit cell angles | 90.00, 100.69, 90.00 |
Refinement procedure
Resolution | 37.890 - 1.200 |
R-factor | 0.173 |
Rwork | 0.172 |
R-free | 0.19400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1kzn |
RMSD bond length | 0.030 |
RMSD bond angle | 2.547 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.7 W8RSSI) |
Phasing software | MOLREP (10.2.23) |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.890 | 37.890 | 1.240 |
High resolution limit [Å] | 1.200 | 2.590 | 1.200 |
Rmerge | 0.045 | 0.024 | 0.392 |
Total number of observations | 458592 | 49114 | 23773 |
Number of reflections | 118625 | ||
<I/σ(I)> | 11.9 | 40.8 | 2.1 |
Completeness [%] | 95.6 | 97.9 | 70.6 |
Redundancy | 3.84 | 3.92 | 2.72 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 296 | 40-43% MPD_P1K_P3350, 100 mM Mops/Na-Hepes, 100 mM Divalents |