Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5CD2

The crystal structure of endo-1,4-D-glucanase from Vibrio fischeri ES114

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2014-12-05
DetectorADSC QUANTUM 315
Wavelength(s)0.97918
Spacegroup nameP 21 21 21
Unit cell lengths55.563, 67.489, 101.192
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution40.500 - 1.550
R-factor0.1374
Rwork0.135
R-free0.17600
Structure solution methodSAD
RMSD bond length0.006
RMSD bond angle1.025
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareHKL-3000
Refinement softwarePHENIX (1.8.2_1309)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.5001.580
High resolution limit [Å]1.5501.550
Rmerge0.1040.602
Number of reflections56160
<I/σ(I)>20.3621.67
Completeness [%]99.896.8
Redundancy6.22.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.52890.2M MgCl2, 0.1M Tris:HCl, 20%(w/v) PEG8000

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon