5BZF
Crystal structure of the murine CD44 hyaluronan binding domain complex with a small molecule
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-16 |
Detector | NOIR-1 |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.987, 81.744, 32.236 |
Unit cell angles | 90.00, 118.20, 90.00 |
Refinement procedure
Resolution | 11.880 - 2.770 |
R-factor | 0.206 |
Rwork | 0.202 |
R-free | 0.29280 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.262 |
Data scaling software | XSCALE |
Phasing software | PHASER (2.1.4) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 11.880 | 2.730 | |
High resolution limit [Å] | 2.660 | 11.880 | 2.660 |
Rmerge | 0.077 | 0.020 | 0.194 |
Rmeas | 0.094 | 0.026 | 0.257 |
Total number of observations | 11169 | ||
Number of reflections | 3766 | 45 | 198 |
<I/σ(I)> | 18.34 | 46.74 | 4.87 |
Completeness [%] | 91.6 | 86.5 | 65.1 |
Redundancy | 2.966 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | PEG MME 5000, MES, (NH4)2SO4 |