Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5BY0

Crystal structure of magnesium-bound Duf89 protein Saccharomyces cerevisiae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2011-10-12
DetectorADSC QUANTUM 315r
Wavelength(s)0.9794
Spacegroup nameC 1 2 1
Unit cell lengths54.407, 108.582, 88.234
Unit cell angles90.00, 97.04, 90.00
Refinement procedure
Resolution34.400 - 1.800
R-factor0.1593
Rwork0.157
R-free0.19480
Structure solution methodSAD
RMSD bond length0.013
RMSD bond angle1.332
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareHKL-3000
Refinement softwarePHENIX (dev_1888)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.4001.830
High resolution limit [Å]1.8001.800
Rmerge0.1030.660
Number of reflections46859
<I/σ(I)>282.8
Completeness [%]99.9100
Redundancy7.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.32910.1 M MgCl2, 0.1 M Bis-Tris, 25% Peg3350

249697

PDB entries from 2026-02-25

PDB statisticsPDBj update infoContact PDBjnumon