5BV3
Yeast Scavenger Decapping Enzyme in complex with m7GDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2009-11-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 87.990, 104.520, 189.960 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.890 - 2.250 |
R-factor | 0.2228 |
Rwork | 0.222 |
R-free | 0.24810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xmm |
RMSD bond length | 0.010 |
RMSD bond angle | 1.354 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.310 | |
High resolution limit [Å] | 2.250 | 10.060 | 2.250 |
Rmerge | 0.079 | 0.031 | 0.716 |
Rmeas | 0.089 | 0.035 | 0.851 |
Total number of observations | 361983 | ||
Number of reflections | 83079 | 849 | 6099 |
<I/σ(I)> | 12.57 | 37.6 | 2.32 |
Completeness [%] | 99.1 | 79.4 | 99.5 |
Redundancy | 2.31 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 100 mM Hepes, 100 mM NaCl, 1.6 M AmSO4 |