5BRA
Crystal Structure of a putative Periplasmic Solute binding protein (IPR025997) from Ochrobactrum Anthropi ATCC49188 (Oant_2843, TARGET EFI-511085)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-03-18 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.97931 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 81.204, 81.204, 103.629 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.615 - 2.971 |
R-factor | 0.1843 |
Rwork | 0.179 |
R-free | 0.29510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3d02 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.386 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 23.800 | 23.800 | 3.020 |
High resolution limit [Å] | 2.970 | 7.960 | 2.970 |
Rmerge | 0.107 | 0.073 | 0.982 |
Rmeas | 0.109 | 0.074 | 0.999 |
Rpim | 0.020 | 0.014 | 0.184 |
Total number of observations | 215050 | ||
Number of reflections | 7605 | ||
<I/σ(I)> | 11.3 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 28.3 | 24.2 | 29.1 |
CC(1/2) | 0.997 | 0.958 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | Protein (20 mM HEPES, pH 7.5, 5 mM DTT, 10 mM D-ribulose); Reservoir (2.5M Ammonium sulphate, 0.1M TRIS, pH 8.5); Cryoprotection (80% Lithium sulfate, 20% Reservoir) |