5B33
The crystal structure of the H2AZ nucleosome with H3.3.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-06-10 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 104.799, 109.872, 181.931 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.005 - 2.925 |
R-factor | 0.2076 |
Rwork | 0.205 |
R-free | 0.25210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3av2 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.202 |
Data scaling software | HKL-2000 (0.98.704k) |
Phasing software | PHASER (2.3.0) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.020 |
High resolution limit [Å] | 2.920 | 6.290 | 2.920 |
Rmerge | 0.070 | 0.048 | 0.474 |
Total number of observations | 311643 | ||
Number of reflections | 45941 | ||
<I/σ(I)> | 14.1 | ||
Completeness [%] | 99.7 | 97.3 | 100 |
Redundancy | 6.8 | 6.2 | 7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | potassium cacodylate, potassium chloride, manganese chloride |