5AXG
Crystal structure of thermophilic dextranase from Thermoanaerobacter pseudethanolicus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2012-06-04 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 81.342, 98.992, 171.130 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 85.690 - 1.850 |
R-factor | 0.167 |
Rwork | 0.166 |
R-free | 0.19046 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Bacillus circulans T-3040 CITase (3WNK) |
RMSD bond length | 0.007 |
RMSD bond angle | 1.215 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0124) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 85.690 | 1.880 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.606 | |
Number of reflections | 118811 | |
<I/σ(I)> | 28.5 | 3.8 |
Completeness [%] | 100.0 | 100 |
Redundancy | 8.6 | 8.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 10 | 293 | 1.35 M sodium dihydrogenphosphate dihydrate, 0.9 M potassium phosphate dibasic, 0.2 M lithium sulfate, 0.1 M 3-(cyclohexylamino)propane-1-sulfonic acid (pH 10.5) |