Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5AMV

Structural insights into the loss of catalytic competence in pectate lyase at low pH

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-1
Synchrotron siteESRF
BeamlineID14-1
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 210
Spacegroup nameP 1 21 1
Unit cell lengths50.780, 88.120, 55.460
Unit cell angles90.00, 110.41, 90.00
Refinement procedure
Resolution51.980 - 1.570
R-factor0.16063
Rwork0.159
R-free0.19283
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1bn8
RMSD bond length0.016
RMSD bond angle1.503
Data reduction softwareiMOSFLM
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwareREFMAC (5.5.0109)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]51.9801.660
High resolution limit [Å]1.5701.570
Rmerge0.0700.360
Number of reflections58741
<I/σ(I)>13.73.5
Completeness [%]93.085.5
Redundancy3.93.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1419% PEG 4K, 0.1M SODIUM ACETATE PH4, 0.2M AMMONIUM ACETATE

247536

PDB entries from 2026-01-14

PDB statisticsPDBj update infoContact PDBjnumon