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5AF7

3-Sulfinopropionyl-coenzyme A (3SP-CoA) desulfinase from Advenella mimigardefordensis DPN7T: crystal structure and function of a desulfinase with an acyl-CoA dehydrogenase fold. Native crystal structure

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2012-08-17
DetectorDECTRIS PILATUS 6M
Spacegroup nameP 21 21 2
Unit cell lengths75.674, 100.652, 118.573
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution63.790 - 1.890
R-factor0.1645
Rwork0.163
R-free0.20170
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ukw
RMSD bond length0.007
RMSD bond angle0.994
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]100.6501.930
High resolution limit [Å]1.8901.890
Rmerge0.1000.730
Number of reflections69785
<I/σ(I)>12.12
Completeness [%]96.097.8
Redundancy3.23.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.4THE CRYSTALS WERE GROWN IN 24-WELL LINBRO PLATES (HAMPTON RESEARCH) BY VAPOUR DIFFUSION IN A HANGING DROP CONFIGURATION FROM 0.1 M BIS-TRIS PH 6.5 AND 10 % PEG 3350 AT A PROTEIN CONCENTRATION OF 10 MG/ML, BY MIXING 2 UL OF THE PROTEIN SOLUTION WITH 2 UL MOTHER LIQUOR.

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