5ZCO
azide-bound cytochrome c oxidase structure determined using the crystals exposed to 2 mM azide solution for 2 days
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 50 |
Detector technology | CCD |
Collection date | 2014-07-03 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 183.379, 206.655, 177.589 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 - 1.900 |
R-factor | 0.1653 |
Rwork | 0.164 |
R-free | 0.18920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5b1a |
RMSD bond length | 0.029 |
RMSD bond angle | 2.583 |
Data scaling software | SCALEPACK |
Phasing software | REFMAC (5.8.0048) |
Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 200.000 | 200.000 | 1.920 |
High resolution limit [Å] | 1.900 | 6.500 | 1.900 |
Rmerge | 0.112 | 0.062 | 0.848 |
Rmeas | 0.116 | 0.066 | 0.892 |
Rpim | 0.031 | 0.021 | 0.274 |
Number of reflections | 523084 | 13485 | 13018 |
<I/σ(I)> | 12.2 | ||
Completeness [%] | 99.9 | 97.6 | 100 |
Redundancy | 12.6 | 12.2 | 10.2 |
CC(1/2) | 0.997 | 0.933 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 6.8 | 277 | PEG 4000, Sodium phosphate |