5Z86
azide-bound cytochrome c oxidase structure determined using the crystals exposed to 20 mM azide solution for 3 days
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 50 |
Detector technology | CCD |
Collection date | 2014-07-03 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 183.490, 206.292, 177.617 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 - 1.850 |
R-factor | 0.1815 |
Rwork | 0.181 |
R-free | 0.19620 |
Starting model (for MR) | 5b1a |
RMSD bond length | 0.008 |
RMSD bond angle | 1.179 |
Data scaling software | SCALEPACK |
Phasing software | REFMAC (5.8.0048) |
Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 200.000 | 200.000 | 1.870 |
High resolution limit [Å] | 1.850 | 6.330 | 1.850 |
Rmerge | 0.100 | 0.049 | 0.990 |
Rmeas | 0.103 | 0.051 | 1.059 |
Rpim | 0.024 | 0.013 | 0.367 |
Number of reflections | 565495 | 14796 | 14002 |
<I/σ(I)> | 12.8 | ||
Completeness [%] | 99.8 | 99.1 | 99.9 |
Redundancy | 13 | 18.4 | 7.9 |
CC(1/2) | 0.999 | 0.878 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 6.8 | 277 | PEG 4000, Sodium phosphate |