Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YZY

AtVAL1 B3 domain in complex with 13bp-DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL18U1
Synchrotron siteSSRF
BeamlineBL18U1
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-15
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.97853
Spacegroup nameI 41 2 2
Unit cell lengths87.780, 87.780, 148.735
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 2.610
R-factor0.21238
Rwork0.210
R-free0.25674
Structure solution methodSAD
RMSD bond length0.013
RMSD bond angle1.695
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareSHELXDE
Refinement softwareREFMAC (5.8.0189)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]75.6002.690
High resolution limit [Å]2.6002.600
Rmerge0.096
Number of reflections9243
<I/σ(I)>37.3
Completeness [%]100.0
Redundancy16.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29330% (w/v) PEG 5000 MME, 0.1M Tris base/Hydrochloric acid, 0.2M Lithium sulfate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon