5YWR
Crystal Structure of RING E3 ligase ZNRF1 in complex with Ube2N (Ubc13)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | RRCAT INDUS-2 BEAMLINE PX-BL21 |
Synchrotron site | RRCAT INDUS-2 |
Beamline | PX-BL21 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-14 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.979470 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.430, 59.548, 94.792 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.417 - 1.470 |
R-factor | 0.1659 |
Rwork | 0.165 |
R-free | 0.18420 |
Structure solution method | SAD |
RMSD bond length | 0.005 |
RMSD bond angle | 0.683 |
Data reduction software | XDS |
Data scaling software | pointless |
Phasing software | SHELXD |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.430 | 1.500 |
High resolution limit [Å] | 1.470 | 1.470 |
Rmerge | 0.055 | 0.872 |
Rpim | 0.031 | 0.587 |
Number of reflections | 46073 | |
<I/σ(I)> | 20.6 | |
Completeness [%] | 99.2 | |
Redundancy | 7.7 | |
CC(1/2) | 0.585 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293.15 | 0.2M Magnesium fromate dihydrate, 20% PEG 3350 (w/v) |