Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YS8

2.8 angstrom crystal structure of Succinate-Acetate Permease from Citrobacter koseri

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]100
Detector technologyPIXEL
Collection date2015-10-23
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1.00
Spacegroup nameP 42
Unit cell lengths79.874, 79.874, 88.501
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.610 - 2.798
R-factor0.2505
Rwork0.245
R-free0.30250
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5ys3
RMSD bond length0.001
RMSD bond angle0.353
Data reduction softwareXDS (v1.0)
Data scaling softwareXDS (v1.0)
Phasing softwarePHENIX (v1.0)
Refinement softwarePHENIX ((1.10_2142: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.900
High resolution limit [Å]2.8002.800
Rmerge0.200
Number of reflections13837
<I/σ(I)>7.71.3
Completeness [%]99.899
Redundancy5.75.75
CC(1/2)1.0000.380
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1LIPIDIC CUBIC PHASE6.5298PEG 400, CaAc2, NaCl

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon