5YRV
Diol dehydratase, AdoCbl/1,2-propanediol, anaerobically-prepared crystal
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL38B1 |
Synchrotron site | SPring-8 |
Beamline | BL38B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-05 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 |
Unit cell lengths | 72.777, 95.666, 114.514 |
Unit cell angles | 80.61, 87.77, 81.25 |
Refinement procedure
Resolution | 44.000 - 1.550 |
R-factor | 0.1555 |
Rwork | 0.155 |
R-free | 0.18130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1iwb |
RMSD bond length | 0.006 |
RMSD bond angle | 1.088 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.000 | 1.590 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.034 | 0.510 |
Rmeas | 0.049 | 0.721 |
Number of reflections | 817733 | 58178 |
<I/σ(I)> | 13.32 | 1.5 |
Completeness [%] | 93.7 | 90.1 |
Redundancy | 2 | 2 |
CC(1/2) | 0.999 | 0.639 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 10.7% (w/v) PEG 3000, 8.6% (w/v) PEG 2000 MME, 50mM Tris pH 7.6 |