5YKB
The N253F mutant structure of trehalose synthase from Deinococcus radiodurans reveals an open active-site conformation
Replaces: 5GTVExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL15A1 |
Synchrotron site | NSRRC |
Beamline | BL15A1 |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2014-05-10 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 100.401, 132.422, 196.013 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.760 |
R-factor | 0.1949 |
Rwork | 0.192 |
R-free | 0.25100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tvu |
RMSD bond length | 0.009 |
RMSD bond angle | 1.298 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | HKL-2000 |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.860 |
High resolution limit [Å] | 2.760 | 2.760 |
Number of reflections | 67645 | 6642 |
<I/σ(I)> | 12.3 | 1.8 |
Completeness [%] | 99.9 | 99.3 |
Redundancy | 4.5 | 4.4 |
CC(1/2) | 0.993 | 0.606 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 288 | 7% PEG 4000, 0.2M sodium acetate trihydrate, 0.3M Tris-HCl (pH 7.0) |