5YGK
Crystal structure of a synthase from Streptomyces sp. CL190 with dmaspp
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-09-10 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 0.9998 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 90.090, 119.308, 93.133 |
Unit cell angles | 90.00, 117.35, 90.00 |
Refinement procedure
Resolution | 24.866 - 2.047 |
R-factor | 0.1853 |
Rwork | 0.184 |
R-free | 0.23570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xk3 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.445 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.120 |
High resolution limit [Å] | 2.047 | 4.410 | 2.050 |
Rmerge | 0.055 | 0.032 | 0.499 |
Rmeas | 0.061 | 0.035 | 0.554 |
Rpim | 0.026 | 0.015 | 0.236 |
Number of reflections | 109264 | 11073 | 10800 |
<I/σ(I)> | 9.8 | ||
Completeness [%] | 99.7 | 99.6 | 99 |
Redundancy | 5.3 | 5.3 | 5 |
CC(1/2) | 0.999 | 0.892 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | NaAc, NaCl HEPES, PEG 3350 |