5YFI
Crystal structure of the anti-human prostaglandin E receptor EP4 antibody Fab fragment
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SPRING-8 BEAMLINE BL41XU |
| Synchrotron site | SPring-8 |
| Beamline | BL41XU |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-04-13 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 1.0 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 40.703, 60.784, 200.182 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 44.935 - 1.848 |
| R-factor | 0.1957 |
| Rwork | 0.194 |
| R-free | 0.23150 |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.766 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER |
| Refinement software | PHENIX ((1.12_2829)) |
Data quality characteristics
| Overall | |
| Low resolution limit [Å] | 50.000 |
| High resolution limit [Å] | 1.848 |
| Number of reflections | 81114 |
| <I/σ(I)> | 9 |
| Completeness [%] | 98.8 |
| Redundancy | 5.2 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 15% PEG 4000, 200 mM zinc acetate, 100 mM MES (pH 6.5), 100 mM guanidine hydrochloride |






