Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YBN

Fe(II)/(alpha)ketoglutarate-dependent dioxygenase PrhA in complex with (alpha)ketoglutarate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]95
Detector technologyPIXEL
Collection date2016-11-04
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.1
Spacegroup nameP 62
Unit cell lengths172.350, 172.350, 45.291
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.087 - 2.104
R-factor0.1881
Rwork0.186
R-free0.22500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5ybm
RMSD bond length0.006
RMSD bond angle0.810
Data scaling softwareAimless
Phasing softwarePHENIX ((1.10.1_2155))
Refinement softwarePHENIX ((1.10.1_2155))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.1002.200
High resolution limit [Å]2.1002.100
Number of reflections44951
<I/σ(I)>17.1
Completeness [%]99.6
Redundancy3.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293PEG 3350, lithium citrate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon