5Y83
Crystal structure of YidC from Thermotoga maritima
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-08-08 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97920 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 75.745, 103.600, 129.706 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.758 - 3.842 |
R-factor | 0.266 |
Rwork | 0.264 |
R-free | 0.31240 |
Structure solution method | MOLECULAR REPLACEMENT |
Data scaling software | HKL-2000 |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.940 |
High resolution limit [Å] | 3.800 | 8.180 | 3.800 |
Rmerge | 0.120 | 0.061 | |
Rmeas | 0.128 | 0.066 | |
Rpim | 0.054 | 0.024 | 0.940 |
Total number of observations | 85442 | ||
Number of reflections | 10459 | 1118 | 1019 |
<I/σ(I)> | 4.4 | ||
Completeness [%] | 99.7 | 97.1 | 100 |
Redundancy | 8.2 | 7.5 | 8.3 |
CC(1/2) | 0.997 | 0.539 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7.5 | 289 | 0.1M HEPES (pH 7.5), 20% PEG1500(w/v) |