5XQ1
Structural basis of kindlin-mediated integrin recognition and activation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-04-30 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.98 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 75.973, 75.973, 387.042 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.986 - 2.954 |
R-factor | 0.2216 |
Rwork | 0.220 |
R-free | 0.26000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xpz |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.000 |
High resolution limit [Å] | 2.950 | 8.000 | 2.950 |
Rmerge | 0.076 | 0.038 | 0.987 |
Rmeas | 0.083 | 0.042 | 1.068 |
Rpim | 0.032 | 0.017 | 0.402 |
Total number of observations | 186136 | ||
Number of reflections | 28446 | ||
<I/σ(I)> | 5.6 | ||
Completeness [%] | 99.8 | 97.7 | 99.9 |
Redundancy | 6.5 | 5.6 | 6.8 |
CC(1/2) | 0.998 | 0.701 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289 | 0.2 M potassium chloride, 0.05 M HEPES pH 7.5, 35% v/v pentaerythritol propoxylate |