5XOC
Crystal structure of human Smad3-FoxH1 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2013-11-02 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 131.865, 131.865, 91.602 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.883 - 2.400 |
R-factor | 0.1983 |
Rwork | 0.196 |
R-free | 0.23530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1mjs |
RMSD bond length | 0.004 |
RMSD bond angle | 0.816 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 114.198 | 19.883 | 2.530 |
High resolution limit [Å] | 2.400 | 7.590 | 2.400 |
Rmerge | 0.027 | 0.822 | |
Rmeas | 0.087 | 0.028 | 0.915 |
Rpim | 0.025 | 0.008 | 0.392 |
Total number of observations | 218635 | 7973 | 13404 |
Number of reflections | 34534 | ||
<I/σ(I)> | 22.6 | 76.5 | 2 |
Completeness [%] | 99.2 | 94.5 | 96.7 |
Redundancy | 11.7 | 12.2 | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.4 | 293 | 0.1 M citrate pH 5.4, 0.8% ethylene imine polymer and 0.5 M NaCl |