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5XMS

Plasmodium vivax SHMT bound with PLP-glycine and GS498

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSRRC BEAMLINE BL13B1
Synchrotron siteNSRRC
BeamlineBL13B1
Temperature [K]100
Detector technologyCCD
Collection date2016-12-15
DetectorADSC QUANTUM 315
Wavelength(s)1
Spacegroup nameC 1 2 1
Unit cell lengths101.808, 58.794, 235.131
Unit cell angles90.00, 89.99, 90.00
Refinement procedure
Resolution30.000 - 2.450
R-factor0.2241
Rwork0.218
R-free0.28040
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4tmr
RMSD bond length0.010
RMSD bond angle1.523
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0103)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.00030.0002.540
High resolution limit [Å]2.4505.2702.450
Rmerge0.0170.0150.058
Rmeas0.0220.0200.077
Rpim0.0150.0130.051
Number of reflections49206
<I/σ(I)>37.3
Completeness [%]95.289.488.7
Redundancy221.9
CC(1/2)0.9990.992
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH8.5298PEG4000, 0.06-0.12M NaCl, 0.1M Tris-HCl pH 8.5

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PDB entries from 2024-05-15

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