5XAQ
Crystal structure of Animalia-specific tRNA deacylase from Mus musculus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2016-07-01 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.54179 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.379, 75.351, 103.619 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.940 - 1.860 |
R-factor | 0.20357 |
Rwork | 0.201 |
R-free | 0.24967 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4nbi |
RMSD bond length | 0.019 |
RMSD bond angle | 2.041 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 60.940 | 1.930 |
High resolution limit [Å] | 1.860 | 1.860 |
Rmerge | 0.076 | 0.380 |
Number of reflections | 29268 | |
<I/σ(I)> | 21.8 | 2.4 |
Completeness [%] | 89.5 | 51.2 |
Redundancy | 6.4 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 277 | BICINE (pH 8.0), PEG1500 |