5X19
CO bound cytochrome c oxidase at 100 micro sec after pump laser irradiation to release CO from O2 reduction center
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | FREE ELECTRON LASER |
Source details | SACLA BEAMLINE BL3 |
Synchrotron site | SACLA |
Beamline | BL3 |
Temperature [K] | 277 |
Detector technology | CCD |
Collection date | 2015-10-12 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.23970 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 185.034, 208.846, 178.046 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.000 - 2.200 |
R-factor | 0.1749 |
Rwork | 0.173 |
R-free | 0.20970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ag1 |
RMSD bond length | 0.016 |
RMSD bond angle | 1.975 |
Data scaling software | cctbx.prime |
Phasing software | REFMAC (5.8.0048) |
Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.240 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.168 | 0.381 |
Number of reflections | 336147 | 15196 |
<I/σ(I)> | 11.78 | |
Completeness [%] | 96.9 | 88.4 |
Redundancy | 70.89 | 5.72 |
CC(1/2) | 0.943 | 0.591 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 6.8 | 277 | 40 mM sodium phosphate, 0.2% decyl maltoside, 2% ethylene glycol, PEG 4000 |