5WTL
Crystal structure of the periplasmic portion of outer membrane protein A (OmpA) from Capnocytophaga gingivalis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-11-28 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97931 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.205, 87.343, 185.458 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.509 - 2.298 |
R-factor | 0.2057 |
Rwork | 0.203 |
R-free | 0.25510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4erh |
RMSD bond length | 0.016 |
RMSD bond angle | 2.072 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.509 | 2.340 |
High resolution limit [Å] | 2.298 | 2.300 |
Number of reflections | 53087 | |
<I/σ(I)> | 8.6 | |
Completeness [%] | 98.6 | |
Redundancy | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 100 mM MES, pH 6.0, 200 mM Ca(Ac)2, 20% PEG 8000 |