5WOL
Crystal structure of dihydrodipicolinate reductase DapB from Coxiella burnetii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-03-17 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97856 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 73.605, 78.795, 84.074 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.746 - 1.700 |
R-factor | 0.1797 |
Rwork | 0.178 |
R-free | 0.21760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yl5 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.270 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP (SIMBAD) |
Refinement software | PHENIX ((dev_2733: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.039 | 0.706 |
Rpim | 0.016 | 0.333 |
Number of reflections | 27235 | 1309 |
<I/σ(I)> | 44.96 | 1.95 |
Completeness [%] | 99.8 | 98.5 |
Redundancy | 7.1 | 5.2 |
CC(1/2) | 0.740 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 2 M ammonium sulfate, 2% (w/v) PEG400, 0.1 M HEPES pH 7.5 |